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Matrix Science mascot daemon v. 2.5.1
Mascot Daemon V. 2.5.1, supplied by Matrix Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mascot+v%2E+2%2E5%2E1/mascot+daemon+software/pmc12142464-315-4-14
Average 90 stars, based on 1 article reviews
mascot daemon v. 2.5.1 - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Tandem Mass Spectroscopy:

Article Title: The tardigrade Hypsibius exemplaris dramatically upregulates DNA repair pathway genes in response to ionizing radiation.
Article Snippet: Article The tardigrade Hypsibius e xemplaris dramatically upregulates DNA repair pathway genes in response to ionizing radiation

Article Title: The zinc transporter Zip14 (SLC39a14) affects Beta-cell Function: Proteomics, Gene expression, and Insulin secretion studies in INS-1E cells
Article Snippet: Database searches and statistics: The raw MS data files from the two separate TMT studies were processed, and all generated peak lists from the same study were merged and analyzed using Mascot v. 2.5.1 (Matrix Science, London, UK) in Proteome Discoverer 2.1 (Thermo Scientific).

Article Title: The zinc transporter Zip14 (SLC39a14) affects Beta-cell Function: Proteomics, Gene expression, and Insulin secretion studies in INS-1E cells
Article Snippet: Data files were merged and analyzed using Mascot v. 2.5.1 (Matrix Science, London, UK) in Proteome Discoverer 2.1 (Thermo Scientific).

Article Title: Molecular basis of the explosive defence response in the bombardier beetle Brachinus crepitans
Article Snippet: In parallel, pkl files of MS/MS spectra were generated and used to search the NCBI nr database (downloaded on 06 March 2021) combined with B. crepitans sub-databases using MASCOT v. 2.5.1 (Matrix Science, UK) with the same parameters as described above.

Article Title: Automation and low-cost proteomics for characterization of the protein corona: experimental methods for big data.
Article Snippet: Nanoparticles used in biological settings are exposed to proteins that adsorb on the surface forming a protein corona.. These adsorbed proteins dictate the subsequent cellular response.. A major challenge has been predicting what proteins will adsorb on a given nanoparticle surface.

Article Title: Metabolic determinants of cancer cell sensitivity to canonical ferroptosis inducers
Article Snippet: Data were quantified and searched against a Uniprot human database (March 2016) using ProteomeDiscoverer v.1.4.0.288 (Thermo Scientific) combined with Mascot v. 2.5.1 (Matrix Science).

Article Title: PI31 is an adaptor protein for proteasome transport in axons and required for synaptic development
Article Snippet: Data were searched and quantified against Uniprot’s Drosophila and human proteome databases using ProteomeDiscoverer v. 1.4.0.288 (Thermo Scientific) combined with Mascot v. 2.5.1 (Matrix Science) and/or MaxQuant v. 1.6.0.13. ( Cox et al., 2014 ).

Article Title: Elucidating Thermothielavioides terrestris secretome changes for improved saccharification of mild steam-pretreated spruce
Article Snippet: Database matching was performed using Mascot (v. 2.5.1, Matrix Science), with a precursor tolerance of 5 ppm and a fragment ion tolerance of 0.6 Da.

Generated:

Article Title: The tardigrade Hypsibius exemplaris dramatically upregulates DNA repair pathway genes in response to ionizing radiation.
Article Snippet: Article The tardigrade Hypsibius e xemplaris dramatically upregulates DNA repair pathway genes in response to ionizing radiation

Article Title: The zinc transporter Zip14 (SLC39a14) affects Beta-cell Function: Proteomics, Gene expression, and Insulin secretion studies in INS-1E cells
Article Snippet: Database searches and statistics: The raw MS data files from the two separate TMT studies were processed, and all generated peak lists from the same study were merged and analyzed using Mascot v. 2.5.1 (Matrix Science, London, UK) in Proteome Discoverer 2.1 (Thermo Scientific).

Article Title: The zinc transporter Zip14 (SLC39a14) affects Beta-cell Function: Proteomics, Gene expression, and Insulin secretion studies in INS-1E cells
Article Snippet: Data files were merged and analyzed using Mascot v. 2.5.1 (Matrix Science, London, UK) in Proteome Discoverer 2.1 (Thermo Scientific).

Article Title: Molecular basis of the explosive defence response in the bombardier beetle Brachinus crepitans
Article Snippet: In parallel, pkl files of MS/MS spectra were generated and used to search the NCBI nr database (downloaded on 06 March 2021) combined with B. crepitans sub-databases using MASCOT v. 2.5.1 (Matrix Science, UK) with the same parameters as described above.

Article Title: Automation and low-cost proteomics for characterization of the protein corona: experimental methods for big data.
Article Snippet: Nanoparticles used in biological settings are exposed to proteins that adsorb on the surface forming a protein corona.. These adsorbed proteins dictate the subsequent cellular response.. A major challenge has been predicting what proteins will adsorb on a given nanoparticle surface.

Article Title: Metabolic determinants of cancer cell sensitivity to canonical ferroptosis inducers
Article Snippet: Data were quantified and searched against a Uniprot human database (March 2016) using ProteomeDiscoverer v.1.4.0.288 (Thermo Scientific) combined with Mascot v. 2.5.1 (Matrix Science).

Article Title: PI31 is an adaptor protein for proteasome transport in axons and required for synaptic development
Article Snippet: Data were searched and quantified against Uniprot’s Drosophila and human proteome databases using ProteomeDiscoverer v. 1.4.0.288 (Thermo Scientific) combined with Mascot v. 2.5.1 (Matrix Science) and/or MaxQuant v. 1.6.0.13. ( Cox et al., 2014 ).

Article Title: Elucidating Thermothielavioides terrestris secretome changes for improved saccharification of mild steam-pretreated spruce
Article Snippet: Database matching was performed using Mascot (v. 2.5.1, Matrix Science), with a precursor tolerance of 5 ppm and a fragment ion tolerance of 0.6 Da.

Multiplex sample analysis:

Article Title: The tardigrade Hypsibius exemplaris dramatically upregulates DNA repair pathway genes in response to ionizing radiation.
Article Snippet: Article The tardigrade Hypsibius e xemplaris dramatically upregulates DNA repair pathway genes in response to ionizing radiation

Article Title: The zinc transporter Zip14 (SLC39a14) affects Beta-cell Function: Proteomics, Gene expression, and Insulin secretion studies in INS-1E cells
Article Snippet: Database searches and statistics: The raw MS data files from the two separate TMT studies were processed, and all generated peak lists from the same study were merged and analyzed using Mascot v. 2.5.1 (Matrix Science, London, UK) in Proteome Discoverer 2.1 (Thermo Scientific).

Article Title: The zinc transporter Zip14 (SLC39a14) affects Beta-cell Function: Proteomics, Gene expression, and Insulin secretion studies in INS-1E cells
Article Snippet: Data files were merged and analyzed using Mascot v. 2.5.1 (Matrix Science, London, UK) in Proteome Discoverer 2.1 (Thermo Scientific).

Article Title: Molecular basis of the explosive defence response in the bombardier beetle Brachinus crepitans
Article Snippet: In parallel, pkl files of MS/MS spectra were generated and used to search the NCBI nr database (downloaded on 06 March 2021) combined with B. crepitans sub-databases using MASCOT v. 2.5.1 (Matrix Science, UK) with the same parameters as described above.

Article Title: Automation and low-cost proteomics for characterization of the protein corona: experimental methods for big data.
Article Snippet: Nanoparticles used in biological settings are exposed to proteins that adsorb on the surface forming a protein corona.. These adsorbed proteins dictate the subsequent cellular response.. A major challenge has been predicting what proteins will adsorb on a given nanoparticle surface.

Article Title: Metabolic determinants of cancer cell sensitivity to canonical ferroptosis inducers
Article Snippet: Data were quantified and searched against a Uniprot human database (March 2016) using ProteomeDiscoverer v.1.4.0.288 (Thermo Scientific) combined with Mascot v. 2.5.1 (Matrix Science).

Article Title: PI31 is an adaptor protein for proteasome transport in axons and required for synaptic development
Article Snippet: Data were searched and quantified against Uniprot’s Drosophila and human proteome databases using ProteomeDiscoverer v. 1.4.0.288 (Thermo Scientific) combined with Mascot v. 2.5.1 (Matrix Science) and/or MaxQuant v. 1.6.0.13. ( Cox et al., 2014 ).

Article Title: Elucidating Thermothielavioides terrestris secretome changes for improved saccharification of mild steam-pretreated spruce
Article Snippet: Database matching was performed using Mascot (v. 2.5.1, Matrix Science), with a precursor tolerance of 5 ppm and a fragment ion tolerance of 0.6 Da.



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